BioIE is a DEMO of biomedical named entity (drug, disease, gene, protein, etc.) annotation and their relation extraction from biomedical texts. The Demo is implemented with Deep learning and Natural Language Processing techniques. A knowledge graph of Hepatocellular carcinoma (HCC) is also presented.
CONTACT: Zhihao Yang (yangzh@dlut.edu.cn)
REFERENCE
1. Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang; An Attention-based BiLSTM-CRF Approach to Document-level Chemical Named Entity Recognition, Bioinformatics, 2018, 34(8), 1381-1388 impact factor 7. 307
2. Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang; Drug Drug Interaction Extraction from Biomedical Literature Using Syntax Convolutional Neural Network, Bioinformatics, 2016, 32(22), 3444-3453 impact factor 7. 307
NOTE: please submit file in UTF-8
NOTE: each newline will be treated as an article.
In addition, we also provide a web API to get NER and REL result for your text, the followings are some info about it.
We provide an online demonstration interface for the API, click here to learn more about this API.
We also provide a sample code written by python, click here to download it.
The Web API is free for academic research purposes only.
Technique support: yangzh@dlut.edu.cn